WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y48G8AL.6 Sequence Name  Y48G8AL.6
Length (nt)  3210   Chromosome Location  I: 1176475-1176621
Chromosome . Primary Identifier  I Chromosome Location . Start  1176475
Chromosome Location . End  1176621
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48G8AL.6

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE28367 SMG-2 120.0 1069 Caenorhabditis elegans
 

Other

15 RNAi

WormBase ID
WBRNAi00084797
WBRNAi00094405
WBRNAi00056970
WBRNAi00084792
WBRNAi00075330
WBRNAi00094396
WBRNAi00093539
WBRNAi00027770
WBRNAi00116693
WBRNAi00069209
WBRNAi00075535
WBRNAi00091909
WBRNAi00069208
WBRNAi00069210
WBRNAi00069865

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y48G8AL.6 1176475 1176621 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004880 smg-2 Y48G8AL.6 Caenorhabditis elegans

9 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y48G8AL.6 1176475 1176621 1
CDS:Y48G8AL.6 1177878 1178419 1
CDS:Y48G8AL.6 1179003 1179391 1
CDS:Y48G8AL.6 1180247 1181187 1
CDS:Y48G8AL.6 1182419 1182503 1
CDS:Y48G8AL.6 1182872 1183179 1
CDS:Y48G8AL.6 1184851 1185135 1
CDS:Y48G8AL.6 1187290 1187503 1
CDS:Y48G8AL.6 1189068 1189366 1

1 Sequence

Length
3210

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y48G8AL.6.1 Y48G8AL.6.1 4675   I: 1176473-1190829