WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48G8AL.1c.1 Sequence Name  Y48G8AL.1c.1
Length (nt)  1932   Chromosome Location  I: 1233807-1254499
Chromosome . Primary Identifier  I Chromosome Location . Start  1233807
Chromosome Location . End  1254499 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48G8AL.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021685 herc-1 Y48G8AL.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48G8AL.1c Y48G8AL.1c 1932   I: 1233807-1233883

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48G8AL.1c.1 1233807 1254499 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon2299   77   I: 1233807-1233883 Caenorhabditis elegans
Exon2303   181   I: 1234493-1234673 Caenorhabditis elegans
Exon2307   196   I: 1236163-1236358 Caenorhabditis elegans
Exon2312   152   I: 1237954-1238105 Caenorhabditis elegans
Exon2317   201   I: 1239439-1239639 Caenorhabditis elegans
Exon2322   156   I: 1241100-1241255 Caenorhabditis elegans
Exon2327   89   I: 1242769-1242857 Caenorhabditis elegans
Exon2332   166   I: 1245227-1245392 Caenorhabditis elegans
Exon2337   228   I: 1247363-1247590 Caenorhabditis elegans
Exon2343   180   I: 1247779-1247958 Caenorhabditis elegans
Exon2350   183   I: 1253333-1253515 Caenorhabditis elegans
Exon2354   123   I: 1254377-1254499 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48G8AL.1c.1 1233807 1254499 1

1 Sequence

Length
1932

1 Sequence Ontology Term

Identifier Name Description
transcript