WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F47G6.2.1 Sequence Name  F47G6.2.1
Length (nt)  2019   Chromosome Location  I: 1471075-1479923
Chromosome . Primary Identifier  I Chromosome Location . Start  1471075
Chromosome Location . End  1479923 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F47G6.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018579 acs-16 F47G6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F47G6.2 F47G6.2 1710   I: 1471321-1471374

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F47G6.2.1 1471075 1479923 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon2592   300   I: 1471075-1471374 Caenorhabditis elegans
Exon2593   234   I: 1475545-1475778 Caenorhabditis elegans
Exon2594   102   I: 1476367-1476468 Caenorhabditis elegans
Exon2595   176   I: 1476639-1476814 Caenorhabditis elegans
Exon2596   115   I: 1476972-1477086 Caenorhabditis elegans
Exon2597   96   I: 1477135-1477230 Caenorhabditis elegans
Exon2598   318   I: 1477829-1478146 Caenorhabditis elegans
Exon2599   242   I: 1478755-1478996 Caenorhabditis elegans
Exon2600   259   I: 1479211-1479469 Caenorhabditis elegans
Exon2601   177   I: 1479747-1479923 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F47G6.2.1 1471075 1479923 1

1 Sequence

Length
2019

1 Sequence Ontology Term

Identifier Name Description
transcript