WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M01D7.2a.1 Sequence Name  M01D7.2a.1
Length (nt)  1399   Chromosome Location  I: 1862607-1872306
Chromosome . Primary Identifier  I Chromosome Location . Start  1862607
Chromosome Location . End  1872306 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M01D7.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004743 scm-1 M01D7.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M01D7.2a M01D7.2a 1008   I: 1862971-1863218

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:M01D7.2a.1 1862607 1872306 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

5 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon3249   612   I: 1862607-1863218 Caenorhabditis elegans
Exon3253   447   I: 1865398-1865844 Caenorhabditis elegans
Exon3256   148   I: 1869151-1869298 Caenorhabditis elegans
Exon3257   132   I: 1870929-1871060 Caenorhabditis elegans
Exon3258   60   I: 1872247-1872306 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:M01D7.2a.1 1862607 1872306 -1

1 Sequence

Length
1399

1 Sequence Ontology Term

Identifier Name Description
transcript