WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y71G12A.2c.1 Sequence Name  Y71G12A.2c.1
Length (nt)  3410   Chromosome Location  I: 1895354-1923091
Chromosome . Primary Identifier  I Chromosome Location . Start  1895354
Chromosome Location . End  1923091 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71G12A.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022138 trpp-10 Y71G12A.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y71G12A.2c Y71G12A.2c 840   I: 1917049-1917128

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y71G12A.2c.1 1895354 1923091 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon3279   84   I: 1895354-1895437 Caenorhabditis elegans
Exon3284   199   I: 1895498-1895696 Caenorhabditis elegans
Exon3287   303   I: 1896475-1896777 Caenorhabditis elegans
Exon3292   399   I: 1899028-1899426 Caenorhabditis elegans
Exon3296   389   I: 1902510-1902898 Caenorhabditis elegans
Exon3300   258   I: 1904345-1904602 Caenorhabditis elegans
Exon3303   223   I: 1906018-1906240 Caenorhabditis elegans
Exon3307   307   I: 1908199-1908505 Caenorhabditis elegans
Exon3311   254   I: 1910215-1910468 Caenorhabditis elegans
Exon3319   95   I: 1917034-1917128 Caenorhabditis elegans
Exon3323   482   I: 1917750-1918231 Caenorhabditis elegans
Exon3328   110   I: 1919230-1919339 Caenorhabditis elegans
Exon3333   307   I: 1922785-1923091 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y71G12A.2c.1 1895354 1923091 1

1 Sequence

Length
3410

1 Sequence Ontology Term

Identifier Name Description
transcript