WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y71G12A.2c.2 Sequence Name  Y71G12A.2c.2
Length (nt)  2829   Chromosome Location  I: 1899021-1923089
Chromosome . Primary Identifier  I Chromosome Location . Start  1899021
Chromosome Location . End  1923089 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71G12A.2c.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022138 trpp-10 Y71G12A.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y71G12A.2c Y71G12A.2c 840   I: 1917049-1917128

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y71G12A.2c.2 1899021 1923089 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon3288   406   I: 1899021-1899426 Caenorhabditis elegans
Exon3297   389   I: 1902510-1902898 Caenorhabditis elegans
Exon3301   258   I: 1904345-1904602 Caenorhabditis elegans
Exon3304   223   I: 1906018-1906240 Caenorhabditis elegans
Exon3308   307   I: 1908199-1908505 Caenorhabditis elegans
Exon3312   254   I: 1910215-1910468 Caenorhabditis elegans
Exon3320   95   I: 1917034-1917128 Caenorhabditis elegans
Exon3324   482   I: 1917750-1918231 Caenorhabditis elegans
Exon3329   110   I: 1919230-1919339 Caenorhabditis elegans
Exon3332   305   I: 1922785-1923089 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y71G12A.2c.2 1899021 1923089 1

1 Sequence

Length
2829

1 Sequence Ontology Term

Identifier Name Description
transcript