WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y20F4.3a.1 Sequence Name  Y20F4.3a.1
Length (nt)  3310   Chromosome Location  I: 1988246-2010525
Chromosome . Primary Identifier  I Chromosome Location . Start  1988246
Chromosome Location . End  2010525 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y20F4.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021238 gap-3 Y20F4.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y20F4.3a Y20F4.3a 2787   I: 1988723-1988896

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y20F4.3a.1 1988246 2010525 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon3421   651   I: 1988246-1988896 Caenorhabditis elegans
Exon3423   526   I: 1990030-1990555 Caenorhabditis elegans
Exon3425   126   I: 1991668-1991793 Caenorhabditis elegans
Exon3427   228   I: 1993294-1993521 Caenorhabditis elegans
Exon3429   261   I: 1995985-1996245 Caenorhabditis elegans
Exon3431   182   I: 1997744-1997925 Caenorhabditis elegans
Exon3436   89   I: 1999953-2000041 Caenorhabditis elegans
Exon3438   91   I: 2000125-2000215 Caenorhabditis elegans
Exon3441   129   I: 2001065-2001193 Caenorhabditis elegans
Exon3442   175   I: 2006130-2006304 Caenorhabditis elegans
Exon3444   245   I: 2007322-2007566 Caenorhabditis elegans
Exon3445   183   I: 2008588-2008770 Caenorhabditis elegans
Exon3446   130   I: 2009830-2009959 Caenorhabditis elegans
Exon3447   95   I: 2010004-2010098 Caenorhabditis elegans
Exon3448   93   I: 2010165-2010257 Caenorhabditis elegans
Exon3449   106   I: 2010420-2010525 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y20F4.3a.1 1988246 2010525 -1

1 Sequence

Length
3310

1 Sequence Ontology Term

Identifier Name Description
transcript