WormMine: Gene WBGene00044925

• WormBase Gene ID: WBGene00044925
• Gene Name: Y37E3.20
• Sequence Name: Y37E3.20
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by several genes including ptl-1; dlc-1; and ilc-17.1 based on RNA-seq studies.
• Biotype: SO:0001267
• Genetic Position: :±
• Length (nt): 119

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00044925

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:Y37E3.20	Y37E3.20	119	I: 2085037-2085155

Other

0 CDSs

0 RNAi Result

8 Allele

• gk963902
• gk964159
• gk963630
• gk962777
• WBVar02120910
• WBVar02120911
• WBVar01500285
• WBVar00097245

1 Chromosome

• WormBase ID: I
• Organism: Caenorhabditis elegans
• Length (nt): 15072434

1 Chromosome Location

• Feature . Primary Identifier: WBGene00044925
• Start: 2085037
• End: 2085155
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

12 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts depleted in purified oocyte P bodies comparing to in whole oocytes.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00065975:P-body_vs_oocyte_depleted
	Transcripts depleted in purified oocyte P bodies comparing to in the whole animal.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00065975:P-body_vs_WholeAnimal_depleted
	Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066594:ilc-17.1(syb5296)_upregulated
	Transcripts that showed significantly increased expression in set-2(tm1630) animals at embryo stage, comparing to in N2 animals.	DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction.	WBPaper00060014:set-2(tm1630)_upregulated
	Transcripts that showed significantly increased expression in sftb-1(cer6) deletion homozygous comparing to to in N2 animals at L4 larva stage.	DESeq2, fold change > 2	WBPaper00058725:sftb-1(cer6)_upregulated
	Transcripts that interact with 3xFLAG-DLC-1 as identified by immunoprecipitation followed by RNA sequencing.	DESeq2, fold change > 2,, p-value < 0.01	WBPaper00055334:DLC-1_interacting
Bacteria infection: Pseudomonas aeruginosa PA14. 24 hours of exposure.	Small RNAs (21-26nt) that showed significantly increased expression after L4 animals were exposed to P .aeruginosa strain PA14 for 24 hours.	DESeq2, FDR < 0.05	WBPaper00056868:P.aeruginosa_upregulated_smallRNA
	Transcripts that showed significantly increased expression in ptl-1(ok621) comparing to in N2	DESeq2 1.14.1, fold change > 1.5, p-value < 0.01.	WBPaper00056039:ptl-1(ok621)_upregulated
	Transcripts that showed significantly increased expression in hda-6(ok3203) comparing to in N2	DESeq2 1.14.1, fold change > 1.5, p-value < 0.01.	WBPaper00056039:hda-6(ok3203)_upregulated
	Transcripts that showed significantly increased expression in strain CER276 sftb1(cer39[Q552P, R643C,K718E]) comparing to in N2 animals at L4 larva stage.	DESeq2, fold change > 2	WBPaper00058725:sftb-1(cer39)_upregulated
	Transcripts that showed significantly decreased expression in lin-52(n771) comparing to in N2 animals at L1 larva stage.	DESeq2	WBPaper00065149:lin-52(n771)_downregulated
Bacteria: P. luminescens infected parents.	Transcripts that showed significantly increased expression in embryos from parents fed with P. luminescens Hb.	DESeq2, Fold Change > 2 or < 0.5.	WBPaper00059566:P.luminescens_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00044925
• Start: 2085037
• End: 2085155
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 119

1 Sequence Ontology Term