WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W03F11.6o.1 Sequence Name  W03F11.6o.1
Length (nt)  4862   Chromosome Location  I: 2168044-2209630
Chromosome . Primary Identifier  I Chromosome Location . Start  2168044
Chromosome Location . End  2209630 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W03F11.6o.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021009 afd-1 W03F11.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W03F11.6o W03F11.6o 4497   I: 2168112-2168432

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W03F11.6o.1 2168044 2209630 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon3746   389   I: 2168044-2168432 Caenorhabditis elegans
Exon3751   167   I: 2172004-2172170 Caenorhabditis elegans
Exon3761   113   I: 2173754-2173866 Caenorhabditis elegans
Exon3772   98   I: 2173925-2174022 Caenorhabditis elegans
Exon3781   96   I: 2174889-2174984 Caenorhabditis elegans
Exon3790   180   I: 2185739-2185918 Caenorhabditis elegans
Exon3803   83   I: 2186631-2186713 Caenorhabditis elegans
Exon3816   62   I: 2192844-2192905 Caenorhabditis elegans
Exon3832   1268   I: 2195399-2196666 Caenorhabditis elegans
Exon3846   96   I: 2197189-2197284 Caenorhabditis elegans
Exon3862   140   I: 2200010-2200149 Caenorhabditis elegans
Exon3877   439   I: 2201730-2202168 Caenorhabditis elegans
Exon3892   291   I: 2203574-2203864 Caenorhabditis elegans
Exon3901   384   I: 2204925-2205308 Caenorhabditis elegans
Exon3922   519   I: 2207320-2207838 Caenorhabditis elegans
Exon3933   537   I: 2209094-2209630 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W03F11.6o.1 2168044 2209630 1

1 Sequence

Length
4862

1 Sequence Ontology Term

Identifier Name Description
transcript