WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W03F11.6j.1 Sequence Name  W03F11.6j.1
Length (nt)  3675   Chromosome Location  I: 2173800-2209333
Chromosome . Primary Identifier  I Chromosome Location . Start  2173800
Chromosome Location . End  2209333 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W03F11.6j.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021009 afd-1 W03F11.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W03F11.6j W03F11.6j 3675   I: 2173800-2173866

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W03F11.6j.1 2173800 2209333 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon3763   67   I: 2173800-2173866 Caenorhabditis elegans
Exon3771   98   I: 2173925-2174022 Caenorhabditis elegans
Exon3780   96   I: 2174889-2174984 Caenorhabditis elegans
Exon3789   180   I: 2185739-2185918 Caenorhabditis elegans
Exon3800   83   I: 2186631-2186713 Caenorhabditis elegans
Exon3813   62   I: 2192844-2192905 Caenorhabditis elegans
Exon3827   1268   I: 2195399-2196666 Caenorhabditis elegans
Exon3841   96   I: 2197189-2197284 Caenorhabditis elegans
Exon3857   140   I: 2200010-2200149 Caenorhabditis elegans
Exon3872   439   I: 2201730-2202168 Caenorhabditis elegans
Exon3887   291   I: 2203574-2203864 Caenorhabditis elegans
Exon3905   96   I: 2205213-2205308 Caenorhabditis elegans
Exon3917   519   I: 2207320-2207838 Caenorhabditis elegans
Exon3927   240   I: 2209094-2209333 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W03F11.6j.1 2173800 2209333 1

1 Sequence

Length
3675

1 Sequence Ontology Term

Identifier Name Description
transcript