WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y39G10AL.3 Sequence Name  Y39G10AL.3
Length (nt)  993   Chromosome Location  I: 2281620-2281811
Chromosome . Primary Identifier  I Chromosome Location . Start  2281620
Chromosome Location . End  2281811
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39G10AL.3

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE30320 CDK-7 38.3 330 Caenorhabditis elegans
 

Other

9 RNAi

WormBase ID
WBRNAi00056261
WBRNAi00087260
WBRNAi00024334
WBRNAi00024335
WBRNAi00087254
WBRNAi00000443
WBRNAi00108295
WBRNAi00027892
WBRNAi00087257

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y39G10AL.3 2281620 2281811 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000408 cdk-7 Y39G10AL.3 Caenorhabditis elegans

8 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y39G10AL.3 2281620 2281811 -1
CDS:Y39G10AL.3 2284728 2284800 -1
CDS:Y39G10AL.3 2284859 2284980 -1
CDS:Y39G10AL.3 2286070 2286180 -1
CDS:Y39G10AL.3 2286231 2286338 -1
CDS:Y39G10AL.3 2287563 2287742 -1
CDS:Y39G10AL.3 2289486 2289587 -1
CDS:Y39G10AL.3 2289643 2289747 -1

1 Sequence

Length
993

1 Sequence Ontology Term

Identifier Name Description
CDS  

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y39G10AL.3.3 Y39G10AL.3.3 1256   I: 2281503-2291091
Transcript:Y39G10AL.3.2 Y39G10AL.3.2 1278   I: 2281503-2291205
Transcript:Y39G10AL.3.1 Y39G10AL.3.1 1115   I: 2281504-2289753