WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Nc Primary Transcript :

WormMine ID  Transcript:Y39G10AR.3c Sequence Name  Y39G10AR.3c
Length (nt)  3133   Chromosome Location  I: 2357883-2372929
Chromosome . Primary Identifier  I Chromosome Location . Start  2357883
Chromosome Location . End  2372929 Method  non_coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39G10AR.3c

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021461 nekl-1 Y39G10AR.3 Caenorhabditis elegans
 

Other

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y39G10AR.3c 2357883 2372929 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

21 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon4293   112   I: 2357883-2357994 Caenorhabditis elegans
Exon4297   263   I: 2358418-2358680 Caenorhabditis elegans
Exon4301   56   I: 2358893-2358948 Caenorhabditis elegans
Exon4305   107   I: 2360069-2360175 Caenorhabditis elegans
Exon4309   116   I: 2360223-2360338 Caenorhabditis elegans
Exon4313   224   I: 2361566-2361789 Caenorhabditis elegans
Exon4317   277   I: 2362713-2362989 Caenorhabditis elegans
Exon4321   111   I: 2363509-2363619 Caenorhabditis elegans
Exon4325   147   I: 2364256-2364402 Caenorhabditis elegans
Exon4329   107   I: 2364454-2364560 Caenorhabditis elegans
Exon4333   72   I: 2364615-2364686 Caenorhabditis elegans
Exon4337   114   I: 2365101-2365214 Caenorhabditis elegans
Exon4344   139   I: 2368920-2369058 Caenorhabditis elegans
Exon4348   159   I: 2369104-2369262 Caenorhabditis elegans
Exon4352   91   I: 2369382-2369472 Caenorhabditis elegans
Exon4356   131   I: 2369521-2369651 Caenorhabditis elegans
Exon4360   200   I: 2369971-2370170 Caenorhabditis elegans
Exon4362   181   I: 2370460-2370640 Caenorhabditis elegans
Exon4367   99   I: 2371097-2371195 Caenorhabditis elegans
Exon4371   171   I: 2371247-2371417 Caenorhabditis elegans
Exon4374   256   I: 2372674-2372929 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y39G10AR.3c 2357883 2372929 1

1 Sequence

Length
3133

1 Sequence Ontology Term

Identifier Name Description
transcript