WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Nc Primary Transcript :

WormMine ID  Transcript:Y39G10AR.3d Sequence Name  Y39G10AR.3d
Length (nt)  3022   Chromosome Location  I: 2358417-2372929
Chromosome . Primary Identifier  I Chromosome Location . Start  2358417
Chromosome Location . End  2372929 Method  non_coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39G10AR.3d

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021461 nekl-1 Y39G10AR.3 Caenorhabditis elegans
 

Other

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39G10AR.3d 2358417 2372929 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon4295   264   I: 2358417-2358680 Caenorhabditis elegans
Exon4302   56   I: 2358893-2358948 Caenorhabditis elegans
Exon4306   107   I: 2360069-2360175 Caenorhabditis elegans
Exon4310   116   I: 2360223-2360338 Caenorhabditis elegans
Exon4314   224   I: 2361566-2361789 Caenorhabditis elegans
Exon4318   277   I: 2362713-2362989 Caenorhabditis elegans
Exon4322   111   I: 2363509-2363619 Caenorhabditis elegans
Exon4326   147   I: 2364256-2364402 Caenorhabditis elegans
Exon4330   107   I: 2364454-2364560 Caenorhabditis elegans
Exon4334   72   I: 2364615-2364686 Caenorhabditis elegans
Exon4338   114   I: 2365101-2365214 Caenorhabditis elegans
Exon4345   139   I: 2368920-2369058 Caenorhabditis elegans
Exon4349   159   I: 2369104-2369262 Caenorhabditis elegans
Exon4353   91   I: 2369382-2369472 Caenorhabditis elegans
Exon4357   131   I: 2369521-2369651 Caenorhabditis elegans
Exon4361   200   I: 2369971-2370170 Caenorhabditis elegans
Exon4363   181   I: 2370460-2370640 Caenorhabditis elegans
Exon4368   99   I: 2371097-2371195 Caenorhabditis elegans
Exon4372   171   I: 2371247-2371417 Caenorhabditis elegans
Exon4375   256   I: 2372674-2372929 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39G10AR.3d 2358417 2372929 1

1 Sequence

Length
3022

1 Sequence Ontology Term

Identifier Name Description
transcript