WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39G10AR.3b.1 Sequence Name  Y39G10AR.3b.1
Length (nt)  2838   Chromosome Location  I: 2358420-2372929
Chromosome . Primary Identifier  I Chromosome Location . Start  2358420
Chromosome Location . End  2372929 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39G10AR.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021461 nekl-1 Y39G10AR.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39G10AR.3b Y39G10AR.3b 2838   I: 2358420-2358680

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39G10AR.3b.1 2358420 2372929 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon4298   261   I: 2358420-2358680 Caenorhabditis elegans
Exon4300   56   I: 2358893-2358948 Caenorhabditis elegans
Exon4304   107   I: 2360069-2360175 Caenorhabditis elegans
Exon4308   116   I: 2360223-2360338 Caenorhabditis elegans
Exon4312   224   I: 2361566-2361789 Caenorhabditis elegans
Exon4316   277   I: 2362713-2362989 Caenorhabditis elegans
Exon4320   111   I: 2363509-2363619 Caenorhabditis elegans
Exon4324   147   I: 2364256-2364402 Caenorhabditis elegans
Exon4328   107   I: 2364454-2364560 Caenorhabditis elegans
Exon4332   72   I: 2364615-2364686 Caenorhabditis elegans
Exon4336   114   I: 2365101-2365214 Caenorhabditis elegans
Exon4343   139   I: 2368920-2369058 Caenorhabditis elegans
Exon4347   159   I: 2369104-2369262 Caenorhabditis elegans
Exon4351   91   I: 2369382-2369472 Caenorhabditis elegans
Exon4355   131   I: 2369521-2369651 Caenorhabditis elegans
Exon4359   200   I: 2369971-2370170 Caenorhabditis elegans
Exon4366   99   I: 2371097-2371195 Caenorhabditis elegans
Exon4370   171   I: 2371247-2371417 Caenorhabditis elegans
Exon4373   256   I: 2372674-2372929 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39G10AR.3b.1 2358420 2372929 1

1 Sequence

Length
2838

1 Sequence Ontology Term

Identifier Name Description
transcript