WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K07A3.2a.1 Sequence Name  K07A3.2a.1
Length (nt)  2927   Chromosome Location  I: 2587527-2595294
Chromosome . Primary Identifier  I Chromosome Location . Start  2587527
Chromosome Location . End  2595294 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K07A3.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004226 ptr-12 K07A3.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K07A3.2a K07A3.2a 2706   I: 2587696-2587836

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K07A3.2a.1 2587527 2595294 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon4676   310   I: 2587527-2587836 Caenorhabditis elegans
Exon4678   257   I: 2589011-2589267 Caenorhabditis elegans
Exon4680   188   I: 2589449-2589636 Caenorhabditis elegans
Exon4682   120   I: 2589689-2589808 Caenorhabditis elegans
Exon4684   416   I: 2590535-2590950 Caenorhabditis elegans
Exon4686   144   I: 2591001-2591144 Caenorhabditis elegans
Exon4688   501   I: 2591887-2592387 Caenorhabditis elegans
Exon4690   184   I: 2592432-2592615 Caenorhabditis elegans
Exon4692   275   I: 2593495-2593769 Caenorhabditis elegans
Exon4694   231   I: 2593834-2594064 Caenorhabditis elegans
Exon4696   61   I: 2594282-2594342 Caenorhabditis elegans
Exon4698   145   I: 2594387-2594531 Caenorhabditis elegans
Exon4701   95   I: 2595200-2595294 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K07A3.2a.1 2587527 2595294 -1

1 Sequence

Length
2927

1 Sequence Ontology Term

Identifier Name Description
transcript