WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y23H5A.5a.1 Sequence Name  Y23H5A.5a.1
Length (nt)  2690   Chromosome Location  I: 2606741-2617360
Chromosome . Primary Identifier  I Chromosome Location . Start  2606741
Chromosome Location . End  2617360 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y23H5A.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000832 ctn-1 Y23H5A.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y23H5A.5a Y23H5A.5a 2439   I: 2606741-2606932

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y23H5A.5a.1 2606741 2617360 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon4722   192   I: 2606741-2606932 Caenorhabditis elegans
Exon4728   84   I: 2607212-2607295 Caenorhabditis elegans
Exon4734   121   I: 2608188-2608308 Caenorhabditis elegans
Exon4740   167   I: 2608861-2609027 Caenorhabditis elegans
Exon4746   420   I: 2609889-2610308 Caenorhabditis elegans
Exon4752   438   I: 2611371-2611808 Caenorhabditis elegans
Exon4758   93   I: 2611863-2611955 Caenorhabditis elegans
Exon4764   93   I: 2612003-2612095 Caenorhabditis elegans
Exon4770   99   I: 2612788-2612886 Caenorhabditis elegans
Exon4776   51   I: 2613334-2613384 Caenorhabditis elegans
Exon4781   471   I: 2614019-2614489 Caenorhabditis elegans
Exon4787   23   I: 2614797-2614819 Caenorhabditis elegans
Exon4789   78   I: 2615077-2615154 Caenorhabditis elegans
Exon4794   90   I: 2615848-2615937 Caenorhabditis elegans
Exon4803   270   I: 2617091-2617360 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y23H5A.5a.1 2606741 2617360 1

1 Sequence

Length
2690

1 Sequence Ontology Term

Identifier Name Description
transcript