WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y71F9B.10a.1 Sequence Name  Y71F9B.10a.1
Length (nt)  4603   Chromosome Location  I: 2761158-2776097
Chromosome . Primary Identifier  I Chromosome Location . Start  2761158
Chromosome Location . End  2776097 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71F9B.10a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004946 sop-3 Y71F9B.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y71F9B.10a Y71F9B.10a 4428   I: 2761318-2761513

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9B.10a.1 2761158 2776097 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon5204   356   I: 2761158-2761513 Caenorhabditis elegans
Exon5212   246   I: 2762147-2762392 Caenorhabditis elegans
Exon5218   957   I: 2763442-2764398 Caenorhabditis elegans
Exon5226   586   I: 2765092-2765677 Caenorhabditis elegans
Exon5232   159   I: 2765738-2765896 Caenorhabditis elegans
Exon5238   660   I: 2767170-2767829 Caenorhabditis elegans
Exon5244   224   I: 2768648-2768871 Caenorhabditis elegans
Exon5250   112   I: 2769761-2769872 Caenorhabditis elegans
Exon5258   570   I: 2770801-2771370 Caenorhabditis elegans
Exon5262   215   I: 2772770-2772984 Caenorhabditis elegans
Exon5268   143   I: 2775424-2775566 Caenorhabditis elegans
Exon5272   88   I: 2775614-2775701 Caenorhabditis elegans
Exon5276   134   I: 2775761-2775894 Caenorhabditis elegans
Exon5280   153   I: 2775945-2776097 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9B.10a.1 2761158 2776097 -1

1 Sequence

Length
4603

1 Sequence Ontology Term

Identifier Name Description
transcript