WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y71F9B.10c.1 Sequence Name  Y71F9B.10c.1
Length (nt)  4625   Chromosome Location  I: 2761158-2776101
Chromosome . Primary Identifier  I Chromosome Location . Start  2761158
Chromosome Location . End  2776101 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71F9B.10c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004946 sop-3 Y71F9B.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y71F9B.10c Y71F9B.10c 4446   I: 2761318-2761513

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9B.10c.1 2761158 2776101 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon5206   356   I: 2761158-2761513 Caenorhabditis elegans
Exon5214   246   I: 2762147-2762392 Caenorhabditis elegans
Exon5220   957   I: 2763442-2764398 Caenorhabditis elegans
Exon5228   604   I: 2765092-2765695 Caenorhabditis elegans
Exon5234   159   I: 2765738-2765896 Caenorhabditis elegans
Exon5240   660   I: 2767170-2767829 Caenorhabditis elegans
Exon5246   224   I: 2768648-2768871 Caenorhabditis elegans
Exon5252   112   I: 2769761-2769872 Caenorhabditis elegans
Exon5260   570   I: 2770801-2771370 Caenorhabditis elegans
Exon5264   215   I: 2772770-2772984 Caenorhabditis elegans
Exon5270   143   I: 2775424-2775566 Caenorhabditis elegans
Exon5274   88   I: 2775614-2775701 Caenorhabditis elegans
Exon5278   134   I: 2775761-2775894 Caenorhabditis elegans
Exon5282   157   I: 2775945-2776101 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9B.10c.1 2761158 2776101 -1

1 Sequence

Length
4625

1 Sequence Ontology Term

Identifier Name Description
transcript