WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W03D8.6c.1 Sequence Name  W03D8.6c.1
Length (nt)  5135   Chromosome Location  I: 2802803-2815830
Chromosome . Primary Identifier  I Chromosome Location . Start  2802803
Chromosome Location . End  2815830 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W03D8.6c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002174 itx-1 W03D8.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W03D8.6c W03D8.6c 4929   I: 2802822-2802960

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W03D8.6c.1 2802803 2815830 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

30 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon5357   158   I: 2802803-2802960 Caenorhabditis elegans
Exon5361   107   I: 2803997-2804103 Caenorhabditis elegans
Exon5364   97   I: 2804151-2804247 Caenorhabditis elegans
Exon5367   293   I: 2804938-2805230 Caenorhabditis elegans
Exon5372   76   I: 2805324-2805399 Caenorhabditis elegans
Exon5377   268   I: 2805455-2805722 Caenorhabditis elegans
Exon5382   232   I: 2805800-2806031 Caenorhabditis elegans
Exon5387   178   I: 2806794-2806971 Caenorhabditis elegans
Exon5392   141   I: 2807018-2807158 Caenorhabditis elegans
Exon5397   124   I: 2807207-2807330 Caenorhabditis elegans
Exon5402   97   I: 2807619-2807715 Caenorhabditis elegans
Exon5407   199   I: 2808246-2808444 Caenorhabditis elegans
Exon5412   150   I: 2808660-2808809 Caenorhabditis elegans
Exon5417   44   I: 2808867-2808910 Caenorhabditis elegans
Exon5422   179   I: 2808963-2809141 Caenorhabditis elegans
Exon5427   144   I: 2809188-2809331 Caenorhabditis elegans
Exon5432   86   I: 2810159-2810244 Caenorhabditis elegans
Exon5437   299   I: 2810289-2810587 Caenorhabditis elegans
Exon5442   186   I: 2810974-2811159 Caenorhabditis elegans
Exon5446   154   I: 2811241-2811394 Caenorhabditis elegans
Exon5451   153   I: 2811470-2811622 Caenorhabditis elegans
Exon5456   343   I: 2811674-2812016 Caenorhabditis elegans
Exon5461   160   I: 2812121-2812280 Caenorhabditis elegans
Exon5466   154   I: 2812785-2812938 Caenorhabditis elegans
Exon5471   279   I: 2813000-2813278 Caenorhabditis elegans
Exon5476   96   I: 2813394-2813489 Caenorhabditis elegans
Exon5481   84   I: 2813547-2813630 Caenorhabditis elegans
Exon5486   62   I: 2813686-2813747 Caenorhabditis elegans
Exon5489   227   I: 2814134-2814360 Caenorhabditis elegans
Exon5498   365   I: 2815466-2815830 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W03D8.6c.1 2802803 2815830 1

1 Sequence

Length
5135

1 Sequence Ontology Term

Identifier Name Description
transcript