WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W03D8.6d.1 Sequence Name  W03D8.6d.1
Length (nt)  4428   Chromosome Location  I: 2805096-2815643
Chromosome . Primary Identifier  I Chromosome Location . Start  2805096
Chromosome Location . End  2815643 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W03D8.6d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002174 itx-1 W03D8.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W03D8.6d W03D8.6d 4428   I: 2805096-2805230

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W03D8.6d.1 2805096 2815643 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

27 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon5368   135   I: 2805096-2805230 Caenorhabditis elegans
Exon5373   76   I: 2805324-2805399 Caenorhabditis elegans
Exon5378   268   I: 2805455-2805722 Caenorhabditis elegans
Exon5383   232   I: 2805800-2806031 Caenorhabditis elegans
Exon5388   178   I: 2806794-2806971 Caenorhabditis elegans
Exon5393   141   I: 2807018-2807158 Caenorhabditis elegans
Exon5398   124   I: 2807207-2807330 Caenorhabditis elegans
Exon5403   97   I: 2807619-2807715 Caenorhabditis elegans
Exon5408   199   I: 2808246-2808444 Caenorhabditis elegans
Exon5413   150   I: 2808660-2808809 Caenorhabditis elegans
Exon5418   44   I: 2808867-2808910 Caenorhabditis elegans
Exon5423   179   I: 2808963-2809141 Caenorhabditis elegans
Exon5428   144   I: 2809188-2809331 Caenorhabditis elegans
Exon5433   86   I: 2810159-2810244 Caenorhabditis elegans
Exon5438   299   I: 2810289-2810587 Caenorhabditis elegans
Exon5443   186   I: 2810974-2811159 Caenorhabditis elegans
Exon5447   154   I: 2811241-2811394 Caenorhabditis elegans
Exon5452   153   I: 2811470-2811622 Caenorhabditis elegans
Exon5457   343   I: 2811674-2812016 Caenorhabditis elegans
Exon5462   160   I: 2812121-2812280 Caenorhabditis elegans
Exon5467   154   I: 2812785-2812938 Caenorhabditis elegans
Exon5472   279   I: 2813000-2813278 Caenorhabditis elegans
Exon5477   96   I: 2813394-2813489 Caenorhabditis elegans
Exon5482   84   I: 2813547-2813630 Caenorhabditis elegans
Exon5487   62   I: 2813686-2813747 Caenorhabditis elegans
Exon5490   227   I: 2814134-2814360 Caenorhabditis elegans
Exon5494   178   I: 2815466-2815643 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W03D8.6d.1 2805096 2815643 1

1 Sequence

Length
4428

1 Sequence Ontology Term

Identifier Name Description
transcript