WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W03D8.6e.1 Sequence Name  W03D8.6e.1
Length (nt)  4362   Chromosome Location  I: 2805096-2815643
Chromosome . Primary Identifier  I Chromosome Location . Start  2805096
Chromosome Location . End  2815643 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W03D8.6e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002174 itx-1 W03D8.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W03D8.6e W03D8.6e 4362   I: 2805096-2805230

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W03D8.6e.1 2805096 2815643 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

27 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon5369   135   I: 2805096-2805230 Caenorhabditis elegans
Exon5374   76   I: 2805324-2805399 Caenorhabditis elegans
Exon5379   268   I: 2805455-2805722 Caenorhabditis elegans
Exon5384   232   I: 2805800-2806031 Caenorhabditis elegans
Exon5389   178   I: 2806794-2806971 Caenorhabditis elegans
Exon5394   141   I: 2807018-2807158 Caenorhabditis elegans
Exon5399   124   I: 2807207-2807330 Caenorhabditis elegans
Exon5404   97   I: 2807619-2807715 Caenorhabditis elegans
Exon5409   199   I: 2808246-2808444 Caenorhabditis elegans
Exon5414   150   I: 2808660-2808809 Caenorhabditis elegans
Exon5419   44   I: 2808867-2808910 Caenorhabditis elegans
Exon5424   179   I: 2808963-2809141 Caenorhabditis elegans
Exon5429   144   I: 2809188-2809331 Caenorhabditis elegans
Exon5434   86   I: 2810159-2810244 Caenorhabditis elegans
Exon5439   299   I: 2810289-2810587 Caenorhabditis elegans
Exon5444   186   I: 2810974-2811159 Caenorhabditis elegans
Exon5448   154   I: 2811241-2811394 Caenorhabditis elegans
Exon5453   153   I: 2811470-2811622 Caenorhabditis elegans
Exon5458   343   I: 2811674-2812016 Caenorhabditis elegans
Exon5463   160   I: 2812121-2812280 Caenorhabditis elegans
Exon5468   154   I: 2812785-2812938 Caenorhabditis elegans
Exon5473   279   I: 2813000-2813278 Caenorhabditis elegans
Exon5478   96   I: 2813394-2813489 Caenorhabditis elegans
Exon5483   84   I: 2813547-2813630 Caenorhabditis elegans
Exon5488   62   I: 2813686-2813747 Caenorhabditis elegans
Exon5493   161   I: 2814200-2814360 Caenorhabditis elegans
Exon5495   178   I: 2815466-2815643 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W03D8.6e.1 2805096 2815643 1

1 Sequence

Length
4362

1 Sequence Ontology Term

Identifier Name Description
transcript