WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y71F9AL.18a.2 Sequence Name  Y71F9AL.18a.2
Length (nt)  3101   Chromosome Location  I: 2907725-2925529
Chromosome . Primary Identifier  I Chromosome Location . Start  2907725
Chromosome Location . End  2925529 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71F9AL.18a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004049 parp-1 Y71F9AL.18 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y71F9AL.18a Y71F9AL.18a 2838   I: 2907857-2907935

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9AL.18a.2 2907725 2925529 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon5715   211   I: 2907725-2907935 Caenorhabditis elegans
Exon5722   254   I: 2907982-2908235 Caenorhabditis elegans
Exon5727   216   I: 2910381-2910596 Caenorhabditis elegans
Exon5732   237   I: 2911987-2912223 Caenorhabditis elegans
Exon5736   333   I: 2913775-2914107 Caenorhabditis elegans
Exon5746   205   I: 2919515-2919719 Caenorhabditis elegans
Exon5750   578   I: 2921373-2921950 Caenorhabditis elegans
Exon5752   123   I: 2923045-2923167 Caenorhabditis elegans
Exon5754   720   I: 2923817-2924536 Caenorhabditis elegans
Exon5756   112   I: 2924602-2924713 Caenorhabditis elegans
Exon5758   112   I: 2925418-2925529 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9AL.18a.2 2907725 2925529 -1

1 Sequence

Length
3101

1 Sequence Ontology Term

Identifier Name Description
transcript