WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y71F9AM.4a.1 Sequence Name  Y71F9AM.4a.1
Length (nt)  2554   Chromosome Location  I: 2931461-2947106
Chromosome . Primary Identifier  I Chromosome Location . Start  2931461
Chromosome Location . End  2947106 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71F9AM.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022121 cogc-3 Y71F9AM.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y71F9AM.4a Y71F9AM.4a 2385   I: 2931461-2931548

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9AM.4a.1 2931461 2947106 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon5777   88   I: 2931461-2931548 Caenorhabditis elegans
Exon5778   167   I: 2931616-2931782 Caenorhabditis elegans
Exon5779   165   I: 2932809-2932973 Caenorhabditis elegans
Exon5780   234   I: 2933903-2934136 Caenorhabditis elegans
Exon5782   92   I: 2935625-2935716 Caenorhabditis elegans
Exon5784   144   I: 2935987-2936130 Caenorhabditis elegans
Exon5786   322   I: 2936560-2936881 Caenorhabditis elegans
Exon5788   161   I: 2937758-2937918 Caenorhabditis elegans
Exon5790   235   I: 2938442-2938676 Caenorhabditis elegans
Exon5797   197   I: 2942824-2943020 Caenorhabditis elegans
Exon5799   133   I: 2943071-2943203 Caenorhabditis elegans
Exon5801   147   I: 2944076-2944222 Caenorhabditis elegans
Exon5803   108   I: 2944274-2944381 Caenorhabditis elegans
Exon5806   361   I: 2946746-2947106 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9AM.4a.1 2931461 2947106 1

1 Sequence

Length
2554

1 Sequence Ontology Term

Identifier Name Description
transcript