WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y71F9AR.1.1 Sequence Name  Y71F9AR.1.1
Length (nt)  3441   Chromosome Location  I: 2949601-2957910
Chromosome . Primary Identifier  I Chromosome Location . Start  2949601
Chromosome Location . End  2957910 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71F9AR.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000237 bam-2 Y71F9AR.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y71F9AR.1 Y71F9AR.1 3024   I: 2949975-2950118

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9AR.1.1 2949601 2957910 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon5808   518   I: 2949601-2950118 Caenorhabditis elegans
Exon5809   296   I: 2950198-2950493 Caenorhabditis elegans
Exon5810   261   I: 2951199-2951459 Caenorhabditis elegans
Exon5811   109   I: 2951517-2951625 Caenorhabditis elegans
Exon5812   98   I: 2951672-2951769 Caenorhabditis elegans
Exon5813   68   I: 2951882-2951949 Caenorhabditis elegans
Exon5814   166   I: 2952182-2952347 Caenorhabditis elegans
Exon5815   893   I: 2953079-2953971 Caenorhabditis elegans
Exon5816   111   I: 2954833-2954943 Caenorhabditis elegans
Exon5817   448   I: 2955331-2955778 Caenorhabditis elegans
Exon5818   155   I: 2956542-2956696 Caenorhabditis elegans
Exon5819   199   I: 2956774-2956972 Caenorhabditis elegans
Exon5820   119   I: 2957792-2957910 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9AR.1.1 2949601 2957910 -1

1 Sequence

Length
3441

1 Sequence Ontology Term

Identifier Name Description
transcript