WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y71F9AR.3.1 Sequence Name  Y71F9AR.3.1
Length (nt)  2325   Chromosome Location  I: 2986104-2995914
Chromosome . Primary Identifier  I Chromosome Location . Start  2986104
Chromosome Location . End  2995914 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71F9AR.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022124 supr-1 Y71F9AR.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y71F9AR.3 Y71F9AR.3 2241   I: 2986187-2986382

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9AR.3.1 2986104 2995914 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon5834   279   I: 2986104-2986382 Caenorhabditis elegans
Exon5835   71   I: 2986992-2987062 Caenorhabditis elegans
Exon5836   65   I: 2987130-2987194 Caenorhabditis elegans
Exon5837   139   I: 2987241-2987379 Caenorhabditis elegans
Exon5838   77   I: 2988234-2988310 Caenorhabditis elegans
Exon5839   68   I: 2988597-2988664 Caenorhabditis elegans
Exon5840   111   I: 2988708-2988818 Caenorhabditis elegans
Exon5841   257   I: 2990663-2990919 Caenorhabditis elegans
Exon5842   312   I: 2992438-2992749 Caenorhabditis elegans
Exon5843   438   I: 2993911-2994348 Caenorhabditis elegans
Exon5844   174   I: 2995245-2995418 Caenorhabditis elegans
Exon5845   63   I: 2995481-2995543 Caenorhabditis elegans
Exon5846   188   I: 2995592-2995779 Caenorhabditis elegans
Exon5847   83   I: 2995832-2995914 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9AR.3.1 2986104 2995914 -1

1 Sequence

Length
2325

1 Sequence Ontology Term

Identifier Name Description
transcript