WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54E10BR.7.1 Sequence Name  Y54E10BR.7.1
Length (nt)  2538   Chromosome Location  I: 3034716-3047794
Chromosome . Primary Identifier  I Chromosome Location . Start  3034716
Chromosome Location . End  3047794 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54E10BR.7.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003387 mod-5 Y54E10BR.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54E10BR.7 Y54E10BR.7 2016   I: 3035238-3035446

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54E10BR.7.1 3034716 3047794 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon5902   731   I: 3034716-3035446 Caenorhabditis elegans
Exon5903   88   I: 3038593-3038680 Caenorhabditis elegans
Exon5904   198   I: 3038735-3038932 Caenorhabditis elegans
Exon5905   258   I: 3039458-3039715 Caenorhabditis elegans
Exon5906   112   I: 3041190-3041301 Caenorhabditis elegans
Exon5907   378   I: 3041776-3042153 Caenorhabditis elegans
Exon5908   134   I: 3042397-3042530 Caenorhabditis elegans
Exon5909   98   I: 3042640-3042737 Caenorhabditis elegans
Exon5910   167   I: 3043023-3043189 Caenorhabditis elegans
Exon5911   247   I: 3043413-3043659 Caenorhabditis elegans
Exon5912   78   I: 3044672-3044749 Caenorhabditis elegans
Exon5913   49   I: 3047746-3047794 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54E10BR.7.1 3034716 3047794 -1

1 Sequence

Length
2538

1 Sequence Ontology Term

Identifier Name Description
transcript