WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54E10BR.1a.1 Sequence Name  Y54E10BR.1a.1
Length (nt)  2986   Chromosome Location  I: 3059227-3069410
Chromosome . Primary Identifier  I Chromosome Location . Start  3059227
Chromosome Location . End  3069410 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54E10BR.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021840 pign-1 Y54E10BR.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54E10BR.1a Y54E10BR.1a 2739   I: 3059314-3059473

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54E10BR.1a.1 3059227 3069410 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon5927   247   I: 3059227-3059473 Caenorhabditis elegans
Exon5928   77   I: 3059530-3059606 Caenorhabditis elegans
Exon5930   300   I: 3059658-3059957 Caenorhabditis elegans
Exon5932   148   I: 3060447-3060594 Caenorhabditis elegans
Exon5934   341   I: 3061201-3061541 Caenorhabditis elegans
Exon5936   284   I: 3062307-3062590 Caenorhabditis elegans
Exon5938   281   I: 3064672-3064952 Caenorhabditis elegans
Exon5940   115   I: 3065003-3065117 Caenorhabditis elegans
Exon5942   238   I: 3066535-3066772 Caenorhabditis elegans
Exon5944   138   I: 3066835-3066972 Caenorhabditis elegans
Exon5946   142   I: 3067738-3067879 Caenorhabditis elegans
Exon5948   293   I: 3067930-3068222 Caenorhabditis elegans
Exon5951   382   I: 3069029-3069410 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54E10BR.1a.1 3059227 3069410 1

1 Sequence

Length
2986

1 Sequence Ontology Term

Identifier Name Description
transcript