WormMine: Gene WBGene00219712

• WormBase Gene ID: WBGene00219712
• Gene Name: linc-167
• Sequence Name: K09H9.10
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including lpd-3; ilc-17.1; and adr-1 based on RNA-seq and microarray studies.
• Biotype: SO:0001641
• Genetic Position: I :-4.47644±
• Length (nt): 5651

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00219712

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:K09H9.10	K09H9.10	2969	I: 3122011-3127661

Other

0 CDSs

0 RNAi Result

118 Allele

• gk963902
• gk964159
• gk963438
• WBVar00245582
• WBVar00245583
• WBVar01694724
• WBVar01602835
• WBVar01602834
• WBVar01602833
• WBVar01421395
• WBVar01956637
• WBVar01421401
• WBVar01956635
• WBVar01421398
• WBVar01414977
• WBVar01398858
• WBVar01398859
• WBVar01398855
• WBVar01272694
• WBVar00027946
• gk106617
• gk106618
• WBVar01421405
• WBVar02039344
• WBVar00027951
• gk106623
• gk106624
• gk106625
• gk106626
• gk106619

1 Chromosome

• WormBase ID: I
• Organism: Caenorhabditis elegans
• Length (nt): 15072434

1 Chromosome Location

• Feature . Primary Identifier: WBGene00219712
• Start: 3122011
• End: 3127661
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrI_3127662..3132969
• Length (nt): 5308
• Chromosome Location: I: 3127662-3132969
• Organism: Caenorhabditis elegans

11 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology.	DESEQ2, fold change > 2 and FDR < 0.01.	WBPaper00062103:neuron_enriched
	Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066594:ilc-17.1(syb5296)_upregulated
	Transcripts that showed significantly increased expression in lpd-3(ok2138) comparing to in N2 animals.	DESeq2, fold change > 4, FDR < 0.05.	WBPaper00064661:lpd-3(ok2138)_upregulated
	Transcripts that showed significantly increased expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm.	Fold change > 2, p-value < 0.05.	WBPaper00060661:sensory-neuron_enriched
	Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2.	Student's t-test, fold change > 2, p-value < 0.05.	WBPaper00055386:daf-2(e1370)_downregulated
	Transcripts that showed significantly decreased expression in adr-1(tm668) comparing to in N2.	DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5.	WBPaper00055226:adr-1(tm668)_downregulated
	Transcripts that showed significantly decreased expression in sams-3(RNAi) comparing to N2 animals injected with empty vector.	Deseq FDR < 0.01, fold change > 2.	WBPaper00065005:sams-3(RNAi)_downregulated
Diet: supplementation of dietary fat P-80.	Transcripts that showed significantly decreased expression in animals grown with supplementation of dietary fat P-80.	Differential expression was assessed using an empirical Bayes moderated t test within limmas linear model framework including the precisio weights estimated by voom. Fold change > 2, FDR < 0.05	WBPaper00062534:fat-P-80_downregulated
	Single-cell RNA-Seq cell group 80_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:80_0
	Single-cell RNA-Seq cell group 20_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:20_0
	Single-cell RNA-Seq cell group 20_2 expressed in neuron.	scVI 0.6.0	WBPaper00065841:20_2

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00219712
• Start: 3122011
• End: 3127661
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 5651

1 Sequence Ontology Term