WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54E10A.5.1 Sequence Name  Y54E10A.5.1
Length (nt)  669   Chromosome Location  I: 3168193-3171230
Chromosome . Primary Identifier  I Chromosome Location . Start  3168193
Chromosome Location . End  3171230 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54E10A.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021827 dnc-6 Y54E10A.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54E10A.5 Y54E10A.5 543   I: 3168212-3168225

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54E10A.5.1 3168193 3171230 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

4 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon6140   33   I: 3168193-3168225 Caenorhabditis elegans
Exon6141   174   I: 3169095-3169268 Caenorhabditis elegans
Exon6142   247   I: 3170006-3170252 Caenorhabditis elegans
Exon6143   215   I: 3171016-3171230 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54E10A.5.1 3168193 3171230 1

1 Sequence

Length
669

1 Sequence Ontology Term

Identifier Name Description
transcript