WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y54E10A.12b Sequence Name  Y54E10A.12b
Length (nt)  933   Chromosome Location  I: 3193659-3193715
Chromosome . Primary Identifier  I Chromosome Location . Start  3193659
Chromosome Location . End  3193715
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54E10A.12b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE54227 SYP-5, isoform b 35.2 310 Caenorhabditis elegans
 

Other

4 RNAi

WormBase ID
WBRNAi00057340
WBRNAi00004724
WBRNAi00037452
WBRNAi00061653

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y54E10A.12b 3193659 3193715 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021832 syp-5 Y54E10A.12 Caenorhabditis elegans

5 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y54E10A.12b 3193659 3193715 -1
CDS:Y54E10A.12b 3193765 3193838 -1
CDS:Y54E10A.12b 3194824 3195114 -1
CDS:Y54E10A.12b 3196113 3196212 -1
CDS:Y54E10A.12b 3196259 3196669 -1

1 Sequence

Length
933

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y54E10A.12b.1 Y54E10A.12b.1 933   I: 3193659-3196669