WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54E10A.15.1 Sequence Name  Y54E10A.15.1
Length (nt)  2651   Chromosome Location  I: 3223160-3228104
Chromosome . Primary Identifier  I Chromosome Location . Start  3223160
Chromosome Location . End  3228104 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54E10A.15.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000413 cdt-1 Y54E10A.15 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54E10A.15 Y54E10A.15 2055   I: 3223619-3223790

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54E10A.15.1 3223160 3228104 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

4 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon6250   631   I: 3223160-3223790 Caenorhabditis elegans
Exon6251   853   I: 3224913-3225765 Caenorhabditis elegans
Exon6252   964   I: 3226879-3227842 Caenorhabditis elegans
Exon6253   203   I: 3227902-3228104 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54E10A.15.1 3223160 3228104 -1

1 Sequence

Length
2651

1 Sequence Ontology Term

Identifier Name Description
transcript