WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54E10A.2.1 Sequence Name  Y54E10A.2.1
Length (nt)  2946   Chromosome Location  I: 3233391-3256077
Chromosome . Primary Identifier  I Chromosome Location . Start  3233391
Chromosome Location . End  3256077 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54E10A.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003258 cogc-1 Y54E10A.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54E10A.2 Y54E10A.2 2364   I: 3233391-3233458

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54E10A.2.1 3233391 3256077 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon6258   68   I: 3233391-3233458 Caenorhabditis elegans
Exon6259   165   I: 3234369-3234533 Caenorhabditis elegans
Exon6260   80   I: 3235248-3235327 Caenorhabditis elegans
Exon6261   86   I: 3235508-3235593 Caenorhabditis elegans
Exon6262   340   I: 3237005-3237344 Caenorhabditis elegans
Exon6263   166   I: 3238191-3238356 Caenorhabditis elegans
Exon6264   181   I: 3239117-3239297 Caenorhabditis elegans
Exon6265   152   I: 3240077-3240228 Caenorhabditis elegans
Exon6266   327   I: 3242158-3242484 Caenorhabditis elegans
Exon6277   103   I: 3253010-3253112 Caenorhabditis elegans
Exon6278   296   I: 3253165-3253460 Caenorhabditis elegans
Exon6280   109   I: 3253863-3253971 Caenorhabditis elegans
Exon6281   141   I: 3254189-3254329 Caenorhabditis elegans
Exon6282   70   I: 3254378-3254447 Caenorhabditis elegans
Exon6283   662   I: 3255416-3256077 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54E10A.2.1 3233391 3256077 1

1 Sequence

Length
2946

1 Sequence Ontology Term

Identifier Name Description
transcript