WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y44E3A.6a.1 Sequence Name  Y44E3A.6a.1
Length (nt)  2889   Chromosome Location  I: 3340212-3349907
Chromosome . Primary Identifier  I Chromosome Location . Start  3340212
Chromosome Location . End  3349907 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y44E3A.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021551 edc-4 Y44E3A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y44E3A.6a Y44E3A.6a 2526   I: 3340559-3340599

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y44E3A.6a.1 3340212 3349907 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon6466   388   I: 3340212-3340599 Caenorhabditis elegans
Exon6471   108   I: 3340648-3340755 Caenorhabditis elegans
Exon6476   409   I: 3342218-3342626 Caenorhabditis elegans
Exon6481   290   I: 3343334-3343623 Caenorhabditis elegans
Exon6486   438   I: 3344573-3345010 Caenorhabditis elegans
Exon6491   133   I: 3345438-3345570 Caenorhabditis elegans
Exon6496   528   I: 3346488-3347015 Caenorhabditis elegans
Exon6501   139   I: 3348133-3348271 Caenorhabditis elegans
Exon6506   113   I: 3348334-3348446 Caenorhabditis elegans
Exon6511   129   I: 3348492-3348620 Caenorhabditis elegans
Exon6516   148   I: 3349617-3349764 Caenorhabditis elegans
Exon6524   66   I: 3349842-3349907 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y44E3A.6a.1 3340212 3349907 -1

1 Sequence

Length
2889

1 Sequence Ontology Term

Identifier Name Description
transcript