WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y44E3A.6d.1 Sequence Name  Y44E3A.6d.1
Length (nt)  2884   Chromosome Location  I: 3340213-3349891
Chromosome . Primary Identifier  I Chromosome Location . Start  3340213
Chromosome Location . End  3349891 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y44E3A.6d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021551 edc-4 Y44E3A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y44E3A.6d Y44E3A.6d 2538   I: 3340559-3340605

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y44E3A.6d.1 3340213 3349891 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon6467   393   I: 3340213-3340605 Caenorhabditis elegans
Exon6475   108   I: 3340648-3340755 Caenorhabditis elegans
Exon6480   409   I: 3342218-3342626 Caenorhabditis elegans
Exon6485   296   I: 3343334-3343629 Caenorhabditis elegans
Exon6490   438   I: 3344573-3345010 Caenorhabditis elegans
Exon6495   133   I: 3345438-3345570 Caenorhabditis elegans
Exon6500   528   I: 3346488-3347015 Caenorhabditis elegans
Exon6505   139   I: 3348133-3348271 Caenorhabditis elegans
Exon6510   113   I: 3348334-3348446 Caenorhabditis elegans
Exon6515   129   I: 3348492-3348620 Caenorhabditis elegans
Exon6520   148   I: 3349617-3349764 Caenorhabditis elegans
Exon6521   50   I: 3349842-3349891 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y44E3A.6d.1 3340213 3349891 -1

1 Sequence

Length
2884

1 Sequence Ontology Term

Identifier Name Description
transcript