WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y44E3A.6c.1 Sequence Name  Y44E3A.6c.1
Length (nt)  2869   Chromosome Location  I: 3340228-3349897
Chromosome . Primary Identifier  I Chromosome Location . Start  3340228
Chromosome Location . End  3349897 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y44E3A.6c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021551 edc-4 Y44E3A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y44E3A.6c Y44E3A.6c 2532   I: 3340559-3340599

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y44E3A.6c.1 3340228 3349897 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon6470   372   I: 3340228-3340599 Caenorhabditis elegans
Exon6474   108   I: 3340648-3340755 Caenorhabditis elegans
Exon6479   409   I: 3342218-3342626 Caenorhabditis elegans
Exon6484   296   I: 3343334-3343629 Caenorhabditis elegans
Exon6489   438   I: 3344573-3345010 Caenorhabditis elegans
Exon6494   133   I: 3345438-3345570 Caenorhabditis elegans
Exon6499   528   I: 3346488-3347015 Caenorhabditis elegans
Exon6504   139   I: 3348133-3348271 Caenorhabditis elegans
Exon6509   113   I: 3348334-3348446 Caenorhabditis elegans
Exon6514   129   I: 3348492-3348620 Caenorhabditis elegans
Exon6519   148   I: 3349617-3349764 Caenorhabditis elegans
Exon6522   56   I: 3349842-3349897 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y44E3A.6c.1 3340228 3349897 -1

1 Sequence

Length
2869

1 Sequence Ontology Term

Identifier Name Description
transcript