WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W05F2.4a.1 Sequence Name  W05F2.4a.1
Length (nt)  6223   Chromosome Location  I: 3374776-3402864
Chromosome . Primary Identifier  I Chromosome Location . Start  3374776
Chromosome Location . End  3402864 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W05F2.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021036 W05F2.4 W05F2.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W05F2.4a W05F2.4a 5847   I: 3375099-3375178

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W05F2.4a.1 3374776 3402864 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

36 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon6579   403   I: 3374776-3375178 Caenorhabditis elegans
Exon6591   292   I: 3375248-3375539 Caenorhabditis elegans
Exon6604   102   I: 3375594-3375695 Caenorhabditis elegans
Exon6616   285   I: 3376349-3376633 Caenorhabditis elegans
Exon6627   513   I: 3377648-3378160 Caenorhabditis elegans
Exon6637   528   I: 3378656-3379183 Caenorhabditis elegans
Exon6647   126   I: 3380181-3380306 Caenorhabditis elegans
Exon6657   75   I: 3380362-3380436 Caenorhabditis elegans
Exon6667   91   I: 3381540-3381630 Caenorhabditis elegans
Exon6677   152   I: 3381859-3382010 Caenorhabditis elegans
Exon6687   145   I: 3382793-3382937 Caenorhabditis elegans
Exon6698   145   I: 3383071-3383215 Caenorhabditis elegans
Exon6707   52   I: 3383956-3384007 Caenorhabditis elegans
Exon6719   218   I: 3387680-3387897 Caenorhabditis elegans
Exon6727   395   I: 3388729-3389123 Caenorhabditis elegans
Exon6735   77   I: 3394670-3394746 Caenorhabditis elegans
Exon6743   246   I: 3394791-3395036 Caenorhabditis elegans
Exon6751   601   I: 3395356-3395956 Caenorhabditis elegans
Exon6759   122   I: 3396666-3396787 Caenorhabditis elegans
Exon6767   69   I: 3396860-3396928 Caenorhabditis elegans
Exon6775   75   I: 3397376-3397450 Caenorhabditis elegans
Exon6779   62   I: 3397511-3397572 Caenorhabditis elegans
Exon6787   126   I: 3397766-3397891 Caenorhabditis elegans
Exon6795   82   I: 3397938-3398019 Caenorhabditis elegans
Exon6803   170   I: 3398463-3398632 Caenorhabditis elegans
Exon6811   131   I: 3398685-3398815 Caenorhabditis elegans
Exon6819   158   I: 3398863-3399020 Caenorhabditis elegans
Exon6831   79   I: 3399601-3399679 Caenorhabditis elegans
Exon6835   121   I: 3399724-3399844 Caenorhabditis elegans
Exon6843   108   I: 3400265-3400372 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W05F2.4a.1 3374776 3402864 -1

1 Sequence

Length
6223

1 Sequence Ontology Term

Identifier Name Description
transcript