WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W05F2.4d.1 Sequence Name  W05F2.4d.1
Length (nt)  3098   Chromosome Location  I: 3374777-3386540
Chromosome . Primary Identifier  I Chromosome Location . Start  3374777
Chromosome Location . End  3386540 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W05F2.4d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021036 W05F2.4 W05F2.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W05F2.4d W05F2.4d 2616   I: 3375099-3375178

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W05F2.4d.1 3374777 3386540 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon6580   402   I: 3374777-3375178 Caenorhabditis elegans
Exon6593   292   I: 3375248-3375539 Caenorhabditis elegans
Exon6606   102   I: 3375594-3375695 Caenorhabditis elegans
Exon6618   285   I: 3376349-3376633 Caenorhabditis elegans
Exon6629   513   I: 3377648-3378160 Caenorhabditis elegans
Exon6639   528   I: 3378656-3379183 Caenorhabditis elegans
Exon6649   126   I: 3380181-3380306 Caenorhabditis elegans
Exon6659   75   I: 3380362-3380436 Caenorhabditis elegans
Exon6669   91   I: 3381540-3381630 Caenorhabditis elegans
Exon6679   152   I: 3381859-3382010 Caenorhabditis elegans
Exon6689   145   I: 3382793-3382937 Caenorhabditis elegans
Exon6699   145   I: 3383071-3383215 Caenorhabditis elegans
Exon6708   52   I: 3383956-3384007 Caenorhabditis elegans
Exon6718   190   I: 3386351-3386540 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W05F2.4d.1 3374777 3386540 -1

1 Sequence

Length
3098

1 Sequence Ontology Term

Identifier Name Description
transcript