WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W05F2.4e.1 Sequence Name  W05F2.4e.1
Length (nt)  5982   Chromosome Location  I: 3375099-3402811
Chromosome . Primary Identifier  I Chromosome Location . Start  3375099
Chromosome Location . End  3402811 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W05F2.4e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021036 W05F2.4 W05F2.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W05F2.4e W05F2.4e 5982   I: 3375099-3375178

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W05F2.4e.1 3375099 3402811 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

36 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon6584   80   I: 3375099-3375178 Caenorhabditis elegans
Exon6594   292   I: 3375248-3375539 Caenorhabditis elegans
Exon6607   102   I: 3375594-3375695 Caenorhabditis elegans
Exon6619   285   I: 3376349-3376633 Caenorhabditis elegans
Exon6630   513   I: 3377648-3378160 Caenorhabditis elegans
Exon6640   528   I: 3378656-3379183 Caenorhabditis elegans
Exon6650   126   I: 3380181-3380306 Caenorhabditis elegans
Exon6660   75   I: 3380362-3380436 Caenorhabditis elegans
Exon6670   91   I: 3381540-3381630 Caenorhabditis elegans
Exon6680   152   I: 3381859-3382010 Caenorhabditis elegans
Exon6690   145   I: 3382793-3382937 Caenorhabditis elegans
Exon6700   145   I: 3383071-3383215 Caenorhabditis elegans
Exon6709   52   I: 3383956-3384007 Caenorhabditis elegans
Exon6720   218   I: 3387680-3387897 Caenorhabditis elegans
Exon6728   395   I: 3388729-3389123 Caenorhabditis elegans
Exon6736   77   I: 3394670-3394746 Caenorhabditis elegans
Exon6744   246   I: 3394791-3395036 Caenorhabditis elegans
Exon6752   601   I: 3395356-3395956 Caenorhabditis elegans
Exon6760   122   I: 3396666-3396787 Caenorhabditis elegans
Exon6768   69   I: 3396860-3396928 Caenorhabditis elegans
Exon6776   75   I: 3397376-3397450 Caenorhabditis elegans
Exon6780   62   I: 3397511-3397572 Caenorhabditis elegans
Exon6788   126   I: 3397766-3397891 Caenorhabditis elegans
Exon6796   82   I: 3397938-3398019 Caenorhabditis elegans
Exon6804   170   I: 3398463-3398632 Caenorhabditis elegans
Exon6812   131   I: 3398685-3398815 Caenorhabditis elegans
Exon6820   158   I: 3398863-3399020 Caenorhabditis elegans
Exon6827   214   I: 3399466-3399679 Caenorhabditis elegans
Exon6836   121   I: 3399724-3399844 Caenorhabditis elegans
Exon6844   108   I: 3400265-3400372 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W05F2.4e.1 3375099 3402811 -1

1 Sequence

Length
5982

1 Sequence Ontology Term

Identifier Name Description
transcript