WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47G6A.6.1 Sequence Name  Y47G6A.6.1
Length (nt)  2574   Chromosome Location  I: 3516450-3523418
Chromosome . Primary Identifier  I Chromosome Location . Start  3516450
Chromosome Location . End  3523418 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47G6A.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021636 pcaf-1 Y47G6A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47G6A.6 Y47G6A.6 2304   I: 3516552-3516668

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47G6A.6.1 3516450 3523418 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon7080   219   I: 3516450-3516668 Caenorhabditis elegans
Exon7081   121   I: 3516725-3516845 Caenorhabditis elegans
Exon7082   128   I: 3516900-3517027 Caenorhabditis elegans
Exon7083   155   I: 3517805-3517959 Caenorhabditis elegans
Exon7084   92   I: 3518023-3518114 Caenorhabditis elegans
Exon7085   101   I: 3518165-3518265 Caenorhabditis elegans
Exon7086   905   I: 3519259-3520163 Caenorhabditis elegans
Exon7087   105   I: 3521303-3521407 Caenorhabditis elegans
Exon7088   128   I: 3521457-3521584 Caenorhabditis elegans
Exon7089   269   I: 3522308-3522576 Caenorhabditis elegans
Exon7090   351   I: 3523068-3523418 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47G6A.6.1 3516450 3523418 1

1 Sequence

Length
2574

1 Sequence Ontology Term

Identifier Name Description
transcript