WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47G6A.19d.1 Sequence Name  Y47G6A.19d.1
Length (nt)  1697   Chromosome Location  I: 3523313-3529962
Chromosome . Primary Identifier  I Chromosome Location . Start  3523313
Chromosome Location . End  3529962 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47G6A.19d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021645 Y47G6A.19 Y47G6A.19 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47G6A.19d Y47G6A.19d 1530   I: 3523474-3523543

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47G6A.19d.1 3523313 3529962 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon7092   231   I: 3523313-3523543 Caenorhabditis elegans
Exon7106   97   I: 3525843-3525939 Caenorhabditis elegans
Exon7112   114   I: 3526494-3526607 Caenorhabditis elegans
Exon7113   99   I: 3526656-3526754 Caenorhabditis elegans
Exon7122   85   I: 3527354-3527438 Caenorhabditis elegans
Exon7127   133   I: 3527484-3527616 Caenorhabditis elegans
Exon7132   185   I: 3527718-3527902 Caenorhabditis elegans
Exon7137   126   I: 3528227-3528352 Caenorhabditis elegans
Exon7142   232   I: 3528573-3528804 Caenorhabditis elegans
Exon7147   395   I: 3529568-3529962 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47G6A.19d.1 3523313 3529962 -1

1 Sequence

Length
1697

1 Sequence Ontology Term

Identifier Name Description
transcript