WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47G6A.19c.1 Sequence Name  Y47G6A.19c.1
Length (nt)  1532   Chromosome Location  I: 3523451-3529956
Chromosome . Primary Identifier  I Chromosome Location . Start  3523451
Chromosome Location . End  3529956 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47G6A.19c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021645 Y47G6A.19 Y47G6A.19 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47G6A.19c Y47G6A.19c 1509   I: 3523474-3523543

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47G6A.19c.1 3523451 3529956 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon7095   93   I: 3523451-3523543 Caenorhabditis elegans
Exon7105   97   I: 3525843-3525939 Caenorhabditis elegans
Exon7111   114   I: 3526494-3526607 Caenorhabditis elegans
Exon7114   78   I: 3526665-3526742 Caenorhabditis elegans
Exon7121   85   I: 3527354-3527438 Caenorhabditis elegans
Exon7126   133   I: 3527484-3527616 Caenorhabditis elegans
Exon7131   185   I: 3527718-3527902 Caenorhabditis elegans
Exon7136   126   I: 3528227-3528352 Caenorhabditis elegans
Exon7141   232   I: 3528573-3528804 Caenorhabditis elegans
Exon7145   389   I: 3529568-3529956 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47G6A.19c.1 3523451 3529956 -1

1 Sequence

Length
1532

1 Sequence Ontology Term

Identifier Name Description
transcript