WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47G6A.5a.1 Sequence Name  Y47G6A.5a.1
Length (nt)  2645   Chromosome Location  I: 3533885-3539580
Chromosome . Primary Identifier  I Chromosome Location . Start  3533885
Chromosome Location . End  3539580 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47G6A.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021635 Y47G6A.5 Y47G6A.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47G6A.5a Y47G6A.5a 1857   I: 3533994-3534114

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47G6A.5a.1 3533885 3539580 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon7148   230   I: 3533885-3534114 Caenorhabditis elegans
Exon7150   165   I: 3534795-3534959 Caenorhabditis elegans
Exon7152   123   I: 3535147-3535269 Caenorhabditis elegans
Exon7154   109   I: 3535320-3535428 Caenorhabditis elegans
Exon7156   218   I: 3535715-3535932 Caenorhabditis elegans
Exon7158   129   I: 3536037-3536165 Caenorhabditis elegans
Exon7160   158   I: 3536332-3536489 Caenorhabditis elegans
Exon7162   92   I: 3536541-3536632 Caenorhabditis elegans
Exon7164   220   I: 3536973-3537192 Caenorhabditis elegans
Exon7166   233   I: 3537240-3537472 Caenorhabditis elegans
Exon7169   968   I: 3538613-3539580 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47G6A.5a.1 3533885 3539580 1

1 Sequence

Length
2645

1 Sequence Ontology Term

Identifier Name Description
transcript