WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47G6A.5b.1 Sequence Name  Y47G6A.5b.1
Length (nt)  1785   Chromosome Location  I: 3534701-3538901
Chromosome . Primary Identifier  I Chromosome Location . Start  3534701
Chromosome Location . End  3538901 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47G6A.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021635 Y47G6A.5 Y47G6A.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47G6A.5b Y47G6A.5b 1725   I: 3534806-3534959

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47G6A.5b.1 3534701 3538901 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon7149   49   I: 3534701-3534749 Caenorhabditis elegans
Exon7151   165   I: 3534795-3534959 Caenorhabditis elegans
Exon7153   123   I: 3535147-3535269 Caenorhabditis elegans
Exon7155   109   I: 3535320-3535428 Caenorhabditis elegans
Exon7157   218   I: 3535715-3535932 Caenorhabditis elegans
Exon7159   129   I: 3536037-3536165 Caenorhabditis elegans
Exon7161   158   I: 3536332-3536489 Caenorhabditis elegans
Exon7163   92   I: 3536541-3536632 Caenorhabditis elegans
Exon7165   220   I: 3536973-3537192 Caenorhabditis elegans
Exon7167   233   I: 3537240-3537472 Caenorhabditis elegans
Exon7168   289   I: 3538613-3538901 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47G6A.5b.1 3534701 3538901 1

1 Sequence

Length
1785

1 Sequence Ontology Term

Identifier Name Description
transcript