WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T12F5.5b Sequence Name  T12F5.5b
Length (nt)  2091   Chromosome Location  I: 3733598-3733703
Chromosome . Primary Identifier  I Chromosome Location . Start  3733598
Chromosome Location . End  3733703
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T12F5.5b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE39278 LARP-5, isoform b 77.7 696 Caenorhabditis elegans
 

Other

5 RNAi

WormBase ID
WBRNAi00053224
WBRNAi00004212
WBRNAi00102177
WBRNAi00035518
WBRNAi00116861

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T12F5.5b 3733598 3733703 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004147 larp-5 T12F5.5 Caenorhabditis elegans

7 Locations


Feature . Primary Identifier
Start End Strand
CDS:T12F5.5b 3733598 3733703 -1
CDS:T12F5.5b 3734433 3734566 -1
CDS:T12F5.5b 3734627 3735919 -1
CDS:T12F5.5b 3736187 3736345 -1
CDS:T12F5.5b 3736396 3736496 -1
CDS:T12F5.5b 3736557 3736693 -1
CDS:T12F5.5b 3737290 3737450 -1

1 Sequence

Length
2091

1 Sequence Ontology Term

Identifier Name Description
CDS  

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T12F5.5b.2 T12F5.5b.2 3232   I: 3732896-3740479
Transcript:T12F5.5b.1 T12F5.5b.1 2811   I: 3732906-3737478
Transcript:T12F5.5b.4 T12F5.5b.4 3001   I: 3732906-3738760
Transcript:T12F5.5b.3 T12F5.5b.3 2845   I: 3732906-3740290