WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D1.1a.1 Sequence Name  C09D1.1a.1
Length (nt)  20769   Chromosome Location  I: 4035702-4078806
Chromosome . Primary Identifier  I Chromosome Location . Start  4035702
Chromosome Location . End  4078806 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D1.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006820 unc-89 C09D1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D1.1a C09D1.1a 19899   I: 4035893-4035942

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09D1.1a.1 4035702 4078806 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

34 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon8353   241   I: 4035702-4035942 Caenorhabditis elegans
Exon8362   274   I: 4036629-4036902 Caenorhabditis elegans
Exon8371   137   I: 4036947-4037083 Caenorhabditis elegans
Exon8380   171   I: 4038490-4038660 Caenorhabditis elegans
Exon8389   163   I: 4038710-4038872 Caenorhabditis elegans
Exon8400   182   I: 4044800-4044981 Caenorhabditis elegans
Exon8409   79   I: 4045025-4045103 Caenorhabditis elegans
Exon8418   221   I: 4045496-4045716 Caenorhabditis elegans
Exon8427   83   I: 4046020-4046102 Caenorhabditis elegans
Exon8441   138   I: 4047250-4047387 Caenorhabditis elegans
Exon8450   111   I: 4047965-4048075 Caenorhabditis elegans
Exon8464   227   I: 4048124-4048350 Caenorhabditis elegans
Exon8478   744   I: 4048906-4049649 Caenorhabditis elegans
Exon8492   69   I: 4049972-4050040 Caenorhabditis elegans
Exon8506   216   I: 4050093-4050308 Caenorhabditis elegans
Exon8520   188   I: 4051955-4052142 Caenorhabditis elegans
Exon8534   484   I: 4052456-4052939 Caenorhabditis elegans
Exon8548   186   I: 4053398-4053583 Caenorhabditis elegans
Exon8562   66   I: 4054476-4054541 Caenorhabditis elegans
Exon8570   1854   I: 4055391-4057244 Caenorhabditis elegans
Exon8582   357   I: 4058536-4058892 Caenorhabditis elegans
Exon8596   1232   I: 4058979-4060210 Caenorhabditis elegans
Exon8612   1861   I: 4060266-4062126 Caenorhabditis elegans
Exon8624   157   I: 4062304-4062460 Caenorhabditis elegans
Exon8638   2160   I: 4062675-4064834 Caenorhabditis elegans
Exon8649   6065   I: 4064920-4070984 Caenorhabditis elegans
Exon8663   244   I: 4071035-4071278 Caenorhabditis elegans
Exon8677   330   I: 4071333-4071662 Caenorhabditis elegans
Exon8695   104   I: 4073538-4073641 Caenorhabditis elegans
Exon8709   275   I: 4075253-4075527 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09D1.1a.1 4035702 4078806 1

1 Sequence

Length
20769

1 Sequence Ontology Term

Identifier Name Description
transcript