WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D1.1e.1 Sequence Name  C09D1.1e.1
Length (nt)  17979   Chromosome Location  I: 4035893-4078127
Chromosome . Primary Identifier  I Chromosome Location . Start  4035893
Chromosome Location . End  4078127 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D1.1e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006820 unc-89 C09D1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D1.1e C09D1.1e 17979   I: 4035893-4035942

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09D1.1e.1 4035893 4078127 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

32 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon8354   50   I: 4035893-4035942 Caenorhabditis elegans
Exon8364   274   I: 4036629-4036902 Caenorhabditis elegans
Exon8373   137   I: 4036947-4037083 Caenorhabditis elegans
Exon8382   171   I: 4038490-4038660 Caenorhabditis elegans
Exon8391   163   I: 4038710-4038872 Caenorhabditis elegans
Exon8402   182   I: 4044800-4044981 Caenorhabditis elegans
Exon8411   79   I: 4045025-4045103 Caenorhabditis elegans
Exon8420   221   I: 4045496-4045716 Caenorhabditis elegans
Exon8429   83   I: 4046020-4046102 Caenorhabditis elegans
Exon8443   138   I: 4047250-4047387 Caenorhabditis elegans
Exon8452   111   I: 4047965-4048075 Caenorhabditis elegans
Exon8466   227   I: 4048124-4048350 Caenorhabditis elegans
Exon8480   744   I: 4048906-4049649 Caenorhabditis elegans
Exon8494   69   I: 4049972-4050040 Caenorhabditis elegans
Exon8508   216   I: 4050093-4050308 Caenorhabditis elegans
Exon8522   188   I: 4051955-4052142 Caenorhabditis elegans
Exon8536   484   I: 4052456-4052939 Caenorhabditis elegans
Exon8550   186   I: 4053398-4053583 Caenorhabditis elegans
Exon8584   357   I: 4058536-4058892 Caenorhabditis elegans
Exon8598   1232   I: 4058979-4060210 Caenorhabditis elegans
Exon8614   1861   I: 4060266-4062126 Caenorhabditis elegans
Exon8626   157   I: 4062304-4062460 Caenorhabditis elegans
Exon8640   2160   I: 4062675-4064834 Caenorhabditis elegans
Exon8651   6065   I: 4064920-4070984 Caenorhabditis elegans
Exon8665   244   I: 4071035-4071278 Caenorhabditis elegans
Exon8679   330   I: 4071333-4071662 Caenorhabditis elegans
Exon8697   104   I: 4073538-4073641 Caenorhabditis elegans
Exon8711   275   I: 4075253-4075527 Caenorhabditis elegans
Exon8725   1085   I: 4075626-4076710 Caenorhabditis elegans
Exon8739   113   I: 4077177-4077289 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09D1.1e.1 4035893 4078127 1

1 Sequence

Length
17979

1 Sequence Ontology Term

Identifier Name Description
transcript