WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D1.1f.1 Sequence Name  C09D1.1f.1
Length (nt)  22326   Chromosome Location  I: 4035893-4090427
Chromosome . Primary Identifier  I Chromosome Location . Start  4035893
Chromosome Location . End  4090427 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D1.1f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006820 unc-89 C09D1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D1.1f C09D1.1f 22326   I: 4035893-4035942

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09D1.1f.1 4035893 4090427 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

46 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon8357   50   I: 4035893-4035942 Caenorhabditis elegans
Exon8365   274   I: 4036629-4036902 Caenorhabditis elegans
Exon8374   137   I: 4036947-4037083 Caenorhabditis elegans
Exon8383   171   I: 4038490-4038660 Caenorhabditis elegans
Exon8392   163   I: 4038710-4038872 Caenorhabditis elegans
Exon8403   182   I: 4044800-4044981 Caenorhabditis elegans
Exon8412   79   I: 4045025-4045103 Caenorhabditis elegans
Exon8421   221   I: 4045496-4045716 Caenorhabditis elegans
Exon8430   83   I: 4046020-4046102 Caenorhabditis elegans
Exon8444   138   I: 4047250-4047387 Caenorhabditis elegans
Exon8453   111   I: 4047965-4048075 Caenorhabditis elegans
Exon8467   227   I: 4048124-4048350 Caenorhabditis elegans
Exon8481   744   I: 4048906-4049649 Caenorhabditis elegans
Exon8495   69   I: 4049972-4050040 Caenorhabditis elegans
Exon8509   216   I: 4050093-4050308 Caenorhabditis elegans
Exon8523   188   I: 4051955-4052142 Caenorhabditis elegans
Exon8537   484   I: 4052456-4052939 Caenorhabditis elegans
Exon8551   186   I: 4053398-4053583 Caenorhabditis elegans
Exon8585   357   I: 4058536-4058892 Caenorhabditis elegans
Exon8599   1232   I: 4058979-4060210 Caenorhabditis elegans
Exon8615   1861   I: 4060266-4062126 Caenorhabditis elegans
Exon8627   157   I: 4062304-4062460 Caenorhabditis elegans
Exon8641   2160   I: 4062675-4064834 Caenorhabditis elegans
Exon8652   6065   I: 4064920-4070984 Caenorhabditis elegans
Exon8666   244   I: 4071035-4071278 Caenorhabditis elegans
Exon8680   330   I: 4071333-4071662 Caenorhabditis elegans
Exon8698   104   I: 4073538-4073641 Caenorhabditis elegans
Exon8712   275   I: 4075253-4075527 Caenorhabditis elegans
Exon8726   1085   I: 4075626-4076710 Caenorhabditis elegans
Exon8740   113   I: 4077177-4077289 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09D1.1f.1 4035893 4090427 1

1 Sequence

Length
22326

1 Sequence Ontology Term

Identifier Name Description
transcript