WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D1.1j.1 Sequence Name  C09D1.1j.1
Length (nt)  20907   Chromosome Location  I: 4047136-4090427
Chromosome . Primary Identifier  I Chromosome Location . Start  4047136
Chromosome Location . End  4090427 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D1.1j.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006820 unc-89 C09D1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D1.1j C09D1.1j 20907   I: 4047136-4047214

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09D1.1j.1 4047136 4090427 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

37 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon8439   79   I: 4047136-4047214 Caenorhabditis elegans
Exon8457   111   I: 4047965-4048075 Caenorhabditis elegans
Exon8471   227   I: 4048124-4048350 Caenorhabditis elegans
Exon8485   744   I: 4048906-4049649 Caenorhabditis elegans
Exon8499   69   I: 4049972-4050040 Caenorhabditis elegans
Exon8513   216   I: 4050093-4050308 Caenorhabditis elegans
Exon8527   188   I: 4051955-4052142 Caenorhabditis elegans
Exon8541   484   I: 4052456-4052939 Caenorhabditis elegans
Exon8555   186   I: 4053398-4053583 Caenorhabditis elegans
Exon8589   357   I: 4058536-4058892 Caenorhabditis elegans
Exon8603   1232   I: 4058979-4060210 Caenorhabditis elegans
Exon8618   1861   I: 4060266-4062126 Caenorhabditis elegans
Exon8631   157   I: 4062304-4062460 Caenorhabditis elegans
Exon8645   2160   I: 4062675-4064834 Caenorhabditis elegans
Exon8656   6065   I: 4064920-4070984 Caenorhabditis elegans
Exon8670   244   I: 4071035-4071278 Caenorhabditis elegans
Exon8684   330   I: 4071333-4071662 Caenorhabditis elegans
Exon8702   104   I: 4073538-4073641 Caenorhabditis elegans
Exon8716   275   I: 4075253-4075527 Caenorhabditis elegans
Exon8730   1085   I: 4075626-4076710 Caenorhabditis elegans
Exon8744   113   I: 4077177-4077289 Caenorhabditis elegans
Exon8758   169   I: 4077395-4077563 Caenorhabditis elegans
Exon8770   100   I: 4078024-4078123 Caenorhabditis elegans
Exon8785   192   I: 4079525-4079716 Caenorhabditis elegans
Exon8799   357   I: 4081936-4082292 Caenorhabditis elegans
Exon8811   265   I: 4082402-4082666 Caenorhabditis elegans
Exon8823   287   I: 4083014-4083300 Caenorhabditis elegans
Exon8835   122   I: 4083824-4083945 Caenorhabditis elegans
Exon8847   404   I: 4084065-4084468 Caenorhabditis elegans
Exon8859   201   I: 4085025-4085225 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09D1.1j.1 4047136 4090427 1

1 Sequence

Length
20907

1 Sequence Ontology Term

Identifier Name Description
transcript