WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D1.1p.1 Sequence Name  C09D1.1p.1
Length (nt)  20667   Chromosome Location  I: 4047136-4090427
Chromosome . Primary Identifier  I Chromosome Location . Start  4047136
Chromosome Location . End  4090427 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D1.1p.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006820 unc-89 C09D1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D1.1p C09D1.1p 20667   I: 4047136-4047214

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09D1.1p.1 4047136 4090427 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

38 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon8440   79   I: 4047136-4047214 Caenorhabditis elegans
Exon8463   111   I: 4047965-4048075 Caenorhabditis elegans
Exon8477   227   I: 4048124-4048350 Caenorhabditis elegans
Exon8491   744   I: 4048906-4049649 Caenorhabditis elegans
Exon8505   69   I: 4049972-4050040 Caenorhabditis elegans
Exon8519   216   I: 4050093-4050308 Caenorhabditis elegans
Exon8533   188   I: 4051955-4052142 Caenorhabditis elegans
Exon8547   484   I: 4052456-4052939 Caenorhabditis elegans
Exon8561   186   I: 4053398-4053583 Caenorhabditis elegans
Exon8569   66   I: 4054476-4054541 Caenorhabditis elegans
Exon8580   1854   I: 4055391-4057244 Caenorhabditis elegans
Exon8595   357   I: 4058536-4058892 Caenorhabditis elegans
Exon8609   1232   I: 4058979-4060210 Caenorhabditis elegans
Exon8623   1861   I: 4060266-4062126 Caenorhabditis elegans
Exon8637   157   I: 4062304-4062460 Caenorhabditis elegans
Exon8662   6065   I: 4064920-4070984 Caenorhabditis elegans
Exon8676   244   I: 4071035-4071278 Caenorhabditis elegans
Exon8690   330   I: 4071333-4071662 Caenorhabditis elegans
Exon8708   104   I: 4073538-4073641 Caenorhabditis elegans
Exon8722   275   I: 4075253-4075527 Caenorhabditis elegans
Exon8736   1085   I: 4075626-4076710 Caenorhabditis elegans
Exon8750   113   I: 4077177-4077289 Caenorhabditis elegans
Exon8764   169   I: 4077395-4077563 Caenorhabditis elegans
Exon8774   100   I: 4078024-4078123 Caenorhabditis elegans
Exon8789   192   I: 4079525-4079716 Caenorhabditis elegans
Exon8803   357   I: 4081936-4082292 Caenorhabditis elegans
Exon8815   265   I: 4082402-4082666 Caenorhabditis elegans
Exon8827   287   I: 4083014-4083300 Caenorhabditis elegans
Exon8839   122   I: 4083824-4083945 Caenorhabditis elegans
Exon8851   404   I: 4084065-4084468 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09D1.1p.1 4047136 4090427 1

1 Sequence

Length
20667

1 Sequence Ontology Term

Identifier Name Description
transcript