WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T01A4.1c.1 Sequence Name  T01A4.1c.1
Length (nt)  4596   Chromosome Location  I: 4491700-4508940
Chromosome . Primary Identifier  I Chromosome Location . Start  4491700
Chromosome Location . End  4508940 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T01A4.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020131 gcy-28 T01A4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T01A4.1c T01A4.1c 3831   I: 4491732-4492596

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T01A4.1c.1 4491700 4508940 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon9987   897   I: 4491700-4492596 Caenorhabditis elegans
Exon9993   115   I: 4498008-4498122 Caenorhabditis elegans
Exon9996   202   I: 4499008-4499209 Caenorhabditis elegans
Exon9999   228   I: 4499693-4499920 Caenorhabditis elegans
Exon10002   120   I: 4500472-4500591 Caenorhabditis elegans
Exon10006   273   I: 4500650-4500922 Caenorhabditis elegans
Exon10007   39   I: 4501784-4501822 Caenorhabditis elegans
Exon10009   330   I: 4502570-4502899 Caenorhabditis elegans
Exon10014   200   I: 4503270-4503469 Caenorhabditis elegans
Exon10018   145   I: 4504425-4504569 Caenorhabditis elegans
Exon10022   172   I: 4504638-4504809 Caenorhabditis elegans
Exon10026   156   I: 4505062-4505217 Caenorhabditis elegans
Exon10030   317   I: 4505722-4506038 Caenorhabditis elegans
Exon10034   238   I: 4506668-4506905 Caenorhabditis elegans
Exon10038   159   I: 4507152-4507310 Caenorhabditis elegans
Exon10041   99   I: 4507484-4507582 Caenorhabditis elegans
Exon10045   906   I: 4508035-4508940 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T01A4.1c.1 4491700 4508940 1

1 Sequence

Length
4596

1 Sequence Ontology Term

Identifier Name Description
transcript